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Query: NC_012917:3684840:3700762 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3700762, End: 3702888, Length: 2127

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3752619:3770347377034737724972151Pectobacterium wasabiae WPP163, complete genomeAnkyrin01163
NC_012917:3684840:3702900370290037049362037Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeAnkyrin4e-99362
NC_019908:2401577:2404689240468924068572169Brachyspira pilosicoli P43/6/78 chromosome, complete genomeankyrin repeat-containing protein2e-0861.6
NC_010830:1543548:1551922155192215561304209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein9e-0859.3
NC_010830:1836984:1842930184293018476874758Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0654.7
NC_003364:1081846:110061511006151101385771Pyrobaculum aerophilum str. IM2, complete genomehypothetical protein with 4 ankyrin repeats5e-0653.5
NC_007759:1028977:1037066103706610383581293Syntrophus aciditrophicus SB, complete genomeankyrin repeat protein8e-0652.8