Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:3241196:3263672 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3263672, End: 3264370, Length: 699

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:1505176:150592715059271506625699Pectobacterium wasabiae WPP163, complete genomeregulatory protein DeoR3e-127454
NC_014618:4114004:412273941227394123437699Enterobacter cloacae SCF1 chromosome, complete genomeregulatory protein DeoR6e-65246
NC_020260:882307:896894896894897631738Cronobacter sakazakii Sp291, complete genomeregulatory protein DeoR2e-62238
NC_014121:3776902:378903437890343789771738Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeregulatory protein DeoR2e-62238
AP010958:5272863:528559852855985286314717Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcription repressor5e-61234
NC_013353:5272863:528559852855985286314717Escherichia coli O103:H2 str. 12009, complete genometranscription repressor5e-61234
NC_011283:4966471:498746449874644988180717Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator3e-61234
NC_013592:3263005:326603132660313266717687Dickeya dadantii Ech586, complete genomeregulatory protein DeoR8e-61233
NC_000913:2746886:276772527677252768426702Escherichia coli K12, complete genomeCP4-57 prophage; predicted DNA-binding transcriptional regulator2e-60232
AC_000091:2747520:276835927683592769060702Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-60232
NC_010473:2839902:285949028594902860191702Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; predicted DNA-binding transcriptional regulator2e-60232
NC_012759:2633949:265353726535372654238702Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; putative DNA-binding transcriptional regulator2e-60232
NC_014618:690056:720643720643721353711Enterobacter cloacae SCF1 chromosome, complete genomeregulatory protein DeoR9e-59226
NC_011415:308825:322797322797323501705Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-57220
NC_016612:443398:459588459588460292705Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-56218
NC_011274:311843:316156316156316869714Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91DNA-binding protein4e-56218
NC_016816:1137904:115333711533371154041705Pantoea ananatis LMG 5342, complete genometranscriptional regulator2e-55215
NC_015663:1356982:137513513751351375824690Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-55215
NC_009708:915814:917099917099917800702Yersinia pseudotuberculosis IP 31758 chromosome, complete genometranscriptional regulator4e-55214
NC_008563:4707826:471267847126784713358681Escherichia coli APEC O1, complete genomeputative transcriptional regulator1e-48192
NC_007946:4875997:489077948907794891459681Escherichia coli UTI89, complete genomehypothetical protein4e-48191
NC_008253:4817864:483127748312774831957681Escherichia coli 536, complete genomehypothetical protein4e-48191
NC_004431:4319152:433552143355214336201681Escherichia coli CFT073, complete genomeHypothetical transcriptional regulator yfjR5e-48191
NC_020418:116500:132123132123132830708Morganella morganii subsp. morganii KT, complete genomeputative transcriptional regulator3e-46185
CP002185:4750571:476728347672834767966684Escherichia coli W, complete genomePredicted transcriptional regulator4e-43174
CP002516:4236680:424490342449034245586684Escherichia coli KO11, complete genomeregulatory protein DeoR4e-43174
NC_016902:4236680:424490342449034245586684Escherichia coli KO11FL chromosome, complete genomeregulatory protein DeoR4e-43174
NC_020260:603796:630428630428631126699Cronobacter sakazakii Sp291, complete genomeregulatory protein DeoR9e-43173
NC_015761:299386:318787318787319434648Salmonella bongori NCTC 12419, complete genomeprophage protein2e-38159
NC_016602:3122700:314620931462093147081873Vibrio furnissii NCTC 11218 chromosome 1, complete sequencetranscriptional regulator7e-1580.9
NC_008781:2883968:289054928905492891454906Polaromonas naphthalenivorans CJ2, complete genomeHelix-turn-helix, type 11 domain protein3e-1479
NC_014762:2428721:243368224336822434560879Sulfuricurvum kujiense DSM 16994 chromosome, complete genomehelix-turn-helix, type 11 domain-containing protein3e-1478.6
NC_008609:206313:214686214686215591906Pelobacter propionicus DSM 2379, complete genomeHelix-turn-helix, type 11 domain protein3e-1168.6
NC_007969:1095438:109643410964341097336903Psychrobacter cryohalolentis K5, complete genometranscriptional regulator-like4e-1168.6
NC_014836:497350:513914513914514846933Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein9e-0753.9