Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1883112 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1883112, End: 1884260, Length: 1149

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015580:3779724:3784676378467637858811206Novosphingobium sp. PP1Y, complete genomehypothetical protein2e-67256
NC_008322:1186000:1210471121047112116761206Shewanella sp. MR-7, complete genomehypothetical protein3e-62239
NC_016631:1329702:1350880135088013523161437Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein2e-36153
NC_008536:5421036:5422066542206654232651200Solibacter usitatus Ellin6076, complete genomehypothetical protein1e-35150
NC_010995:2123909:2127619212761921287881170Cellvibrio japonicus Ueda107, complete genomehypothetical protein2e-32140
NC_011769:787496:8039348039348051001167Desulfovibrio vulgaris str. 'Miyazaki F', complete genomehypothetical protein6e-29128