Pre_GI: BLASTP Hits

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Query: NC_012854:1:3803 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,

Start: 3803, End: 5080, Length: 1278

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010814:1441327:1465186146518614665171332Geobacter lovleyi SZ, complete genomehypothetical protein3e-46186
NC_013959:1059004:1090954109095410922551302Sideroxydans lithotrophicus ES-1 chromosome, complete genomehypothetical protein2e-43176
NC_014973:3414459:3425089342508934265221434Geobacter sp. M18 chromosome, complete genomehypothetical protein9e-43174
NC_011146:3720658:3733981373398137354501470Geobacter bemidjiensis Bem, complete genomehypothetical protein2e-40167
NC_014931:724102:7500997500997514211323Variovorax paradoxus EPS chromosome, complete genomehypothetical protein3e-35149
NC_015410:3209954:3217953321795332194431491Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein2e-34147
NC_012560:2026483:204392320439232044810888Azotobacter vinelandii DJ, complete genomehypothetical protein1e-27124
NC_021150:2026496:204393620439362044823888Azotobacter vinelandii CA6, complete genomehypothetical protein1e-27124
NC_004547:1873390:1878819187881918801141296Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical plasmid protein3e-1273.6
NC_009792:3245368:324859132485913249358768Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0964.3
NC_020209:4312892:433270643327064333179474Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-0757