Pre_GI: BLASTP Hits

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Query: NC_012668:2744393:2765141 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2765141, End: 2766163, Length: 1023

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009457:351512:3883813883813894031023Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilus biosynthesis protein E0681
NC_014618:1040381:1059494105949410605191026Enterobacter cloacae SCF1 chromosome, complete genometype II secretion system F domain-containing protein2e-71269
NC_017047:4379989:4392990439299043940361047Rahnella aquatilis HX2 chromosome, complete genometype II secretion system F domain-containing protein5e-71268
NC_015061:4286000:4299104429910443001501047Rahnella sp. Y9602 chromosome, complete genomeType II secretion system F domain protein5e-71268
NC_020063:528296:5427715427715438051035Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulF4e-70265
NC_015761:299386:3378873378873389151029Salmonella bongori NCTC 12419, complete genomepilin-related type II secretion protein8e-65247
NC_005126:2063667:2077196207719620782931098Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-1789.7
NC_012214:3502992:3511151351115135122601110Erwinia pyrifoliae Ep1/96, complete genometype IV pilus integral membrane protein5e-1788.6
NC_007507:11000:1735117351184481098Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilR-like integral membrane protein1e-1481.3
NC_015850:1155376:1179517117951711806171101Acidithiobacillus caldus SM-1 chromosome, complete genomeintegral membrane protein2e-1170.5
NC_009656:4527457:4609300460930046103791080Pseudomonas aeruginosa PA7 chromosome, complete genometype IV B pilus protein3e-1169.7
NC_008463:5246954:5283717528371752847961080Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV B pilus Protein3e-1169.7
NC_018080:5091772:5128705512870551297841080Pseudomonas aeruginosa DK2 chromosome, complete genometype IV B pilus protein3e-1169.3
NC_012751:942315:9459009459009469641065Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilR type IV pilus biosynthesis protein3e-1169.3
NC_007759:291368:2923752923752935861212Syntrophus aciditrophicus SB, complete genomegeneral secretion pathway protein F4e-1065.9
NC_004129:5373886:5406087540608754072531167Pseudomonas fluorescens Pf-5, complete genomeintegral membrane protein, putative1e-0964.3
NC_016616:2699350:2747608274760827487201113Dechlorosoma suillum PS chromosome, complete genometype II secretory pathway, component PulF4e-0962.8
NC_005126:1223042:1234512123451212355971086Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0860.8
NC_007950:185500:1985251985251995981074Polaromonas sp. JS666 plasmid 2, complete sequencetype II secretion system protein2e-0860.1
NC_010801:629347:6517316517316527711041Burkholderia multivorans ATCC 17616 chromosome 3, completetype II secretory pathway component2e-0757
NC_010087:265625:2719932719932731261134Burkholderia multivorans ATCC 17616 chromosome 3, completetype II secretion system protein2e-0756.6
NC_002939:1926084:1947687194768719488951209Geobacter sulfurreducens PCA, complete genometype IV pilus biogenesis protein PilC, putative1e-0654.3
NC_012881:4023895:4023895402389540251061212Desulfovibrio salexigens DSM 2638, complete genometype II secretion system protein2e-0653.1
NC_009483:2201986:2227646222764622288541209Geobacter uraniireducens Rf4 chromosome, complete genometype II secretion system protein3e-0653.1
NC_010682:1624985:1630239163023916313121074Ralstonia pickettii 12J chromosome 1, complete sequencetype II secretion system protein3e-0653.1
NC_019978:1816940:1820090182009018213011212Halobacteroides halobius DSM 5150, complete genometype II secretory pathway, component PulF7e-0651.6