Pre_GI: BLASTP Hits

Some Help

Query: NC_012660:5793200:5804989 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 5804989, End: 5805441, Length: 453

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013508:1491945:150599215059921506885894Edwardsiella tarda EIB202, complete genomepredicted nucleotide-binding protein containing TIR -like domain1e-62238
NC_009254:637952:6886996886996898321134Burkholderia vietnamiensis G4 chromosome 3, complete sequencenucleotide-binding protein1e-60231
NC_015593:797675:808323808323809219897Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeNucleotide-binding protein TIR-like protein1e-55214
NC_007509:71954:923849238492767384Burkholderia sp. 383 chromosome 3, complete sequencenucleotide-binding protein containing TIR-like domain3e-44176
NC_007912:909112:924353924353925216864Saccharophagus degradans 2-40, complete genomenucleotide-binding protein containing TIR -like domain-like3e-38156
NC_006905:2857699:286436328643632865349987Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein8e-37152
NC_012125:2826624:284638028463802847219840Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-36151
NC_010511:5424004:543090954309095431814906Methylobacterium sp. 4-46 chromosome, complete genomenucleotide-binding protein3e-36150
NC_011899:12699:341023410234926825Halothermothrix orenii H 168, complete genome3e-36150
NC_013440:6045708:6056153605615360579431791Haliangium ochraceum DSM 14365, complete genomeNucleotide-binding protein, predicted, TIR-like protein3e-35146
NC_009485:3461051:347096034709603471835876Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein5e-32136
NC_004547:3207776:323828032382803239092813Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-30132
NC_004459:2443000:251914825191482520047900Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted nucleotide-binding protein4e-28123
NC_009051:1730104:174029817402981741206909Methanoculleus marisnigri JR1, complete genomenucleotide-binding protein containing TIR-like domain-like2e-27120
NC_014666:13876:198111981120680870Frankia sp. EuI1c chromosome, complete genomenucleotide-binding protein1e-24112
NC_003295:2787371:281548328154832816184702Ralstonia solanacearum GMI1000, complete genomehypothetical protein8e-23105
NC_014774:171500:200227200227201039813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-21100
NC_014774:1210004:124109612410961241908813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-21100
NC_013958:29548:421784217842963786Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequencenucleotide-binding protein containing TIR -like protein domain-like protein2e-1581.6
NC_012791:2832001:285597728559772856747771Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein1e-1478.6
NC_014550:3377834:3427593342759334286451053Arthrobacter arilaitensis Re117, complete genomehypothetical protein4e-0857
NC_009659:1050532:111990511199051120816912Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein8e-0856.2
NC_009445:6621996:664819266481926648395204Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein2e-0755.1