Pre_GI: BLASTP Hits

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Query: NC_012125:894955:935297 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 935297, End: 935752, Length: 456

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:894136:935009935009935464456Dickeya dadantii 3937 chromosome, complete genomehypothetical protein5e-60229
NC_013892:992811:100411610041161004571456Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-58224
NC_009656:5185704:520756152075615208010450Pseudomonas aeruginosa PA7 chromosome, complete genometail tube2e-47187
NC_007712:433500:453227453227453805579Sodalis glossinidius str. 'morsitans', complete genomeputative phage tail tube protein6e-44176
NC_008750:3314309:332035133203513320806456Shewanella sp. W3-18-1, complete genomeprophage PSPPH06, putative tail tube protein1e-42171
NC_016602:2586044:260946826094682609923456Vibrio furnissii NCTC 11218 chromosome 1, complete sequencehypothetical protein5e-38156