Pre_GI: BLASTP Hits

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Query: NC_012125:894955:932481 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 932481, End: 932969, Length: 489

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013592:804288:832887832887833399513Dickeya dadantii Ech586, complete genomehead completion protein4e-53206
NC_014500:894136:932196932196932699504Dickeya dadantii 3937 chromosome, complete genomeputative head completion/stabilization protein9e-53205
NC_013892:992811:100135410013541001806453Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein5e-40163
NC_009348:4135002:413620641362064136667462Aeromonas salmonicida subsp. salmonicida A449, complete genomephage head completion protein9e-2095.9
NC_009656:5185704:520487252048725205333462Pseudomonas aeruginosa PA7 chromosome, complete genomephage head completion protein8e-1476.3
NC_005773:5636606:563704656370465637507462Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH06, putative head completion/stabilization protein2e-1374.7