Pre_GI: BLASTP Hits

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Query: NC_012125:894955:931719 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 931719, End: 932420, Length: 702

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:894136:931449931449932150702Dickeya dadantii 3937 chromosome, complete genomeputative terminase, endonuclease subunit2e-78291
NC_013592:804288:832149832149832850702Dickeya dadantii Ech586, complete genomesmall terminase subunit2e-78291
NC_013892:992811:100054610005461001253708Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein6e-64243
NC_009348:4135002:413678341367834137511729Aeromonas salmonicida subsp. salmonicida A449, complete genomephage terminase subunit1e-52206
NC_008750:3314309:332367233236723324145474Shewanella sp. W3-18-1, complete genomehypothetical protein9e-27120
NC_005773:5636606:563760656376065638328723Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-25115
NC_009656:5185704:520403752040375204774738Pseudomonas aeruginosa PA7 chromosome, complete genomeputative terminase, endonuclease subunit2e-21102
NC_011883:269497:290599290599291348750Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,small terminase subunit2e-1479.3
NC_008751:3214000:321405432140543214788735Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage small terminase subunit2e-1066.2
NC_008751:1762562:176256217625621763296735Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage small terminase subunit3e-1065.9
NC_007963:1582089:158403715840371584702666Chromohalobacter salexigens DSM 3043, complete genomephage small terminase subunit9e-0960.5
NC_020209:3262000:327820232782023278921720Pseudomonas poae RE*1-1-14, complete genomephage P2 small terminase subunit gpM-like protein4e-0858.5
NC_017047:1551836:157143315714331572179747Rahnella aquatilis HX2 chromosome, complete genomegpM4e-0858.5
NC_016818:1605918:162468116246811625430750Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage small terminase subunit3e-0858.5
NC_012917:3565268:359057535905753591234660Pectobacterium carotovorum subsp. carotovorum PC1, complete genomesmall terminase subunit8e-0857.4
NC_020211:4598217:459971045997104600369660Serratia marcescens WW4, complete genomephage terminase, endonuclease subunit6e-0754.3
NC_014837:3766426:376843037684303769080651Pantoea sp. At-9b chromosome, complete genomesmall terminase subunit7e-0754.3
NC_014306:1244721:126190612619061262556651Erwinia billingiae Eb661, complete genomeTerminase, endonuclease subunit8e-0753.9
NC_015856:1152021:117044811704481171164717Collimonas fungivorans Ter331 chromosome, complete genomephage small terminase subunit1e-0653.5
NC_012724:147454:148594148594149283690Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein1e-0653.5
NC_014323:992978:992978992978993697720Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage-related terminase2e-0652.8
NC_014562:1698253:171339117133911713963573Pantoea vagans C9-1 chromosome, complete genomeTerminase, endonuclease subunit (GpM)2e-0652.4
NC_017059:3688688:369236436923643693062699Rhodospirillum photometricum DSM 122, complete genomeSmall terminase subunit (Endonuclease subunit of bacteriophage terminase)6e-0651.2