Pre_GI: BLASTP Hits

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Query: NC_012125:4716000:4727958 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4727958, End: 4728128, Length: 171

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:4638707:465064246506424651313672Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-27120
NC_011283:4438500:445797244579724458637666Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-1683.6
NC_009792:3245368:327970332797033280371669Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1683.2
NC_013941:3300000:332830333283033329004702Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1683.2