Pre_GI: BLASTP Hits

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Query: NC_012125:4716000:4727227 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4727227, End: 4727640, Length: 414

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:4638707:464994746499474650324378Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-64244
NC_011283:4438500:445869544586954459117423Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-50197
NC_013941:3300000:333109133310913331561471Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein9e-50195
NC_002695:3468873:349335934933593493772414Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-48191
NC_013008:3525428:355232035523203552733414Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-48191
NC_002655:3538656:356064335606433561113471Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-48191
NC_011353:3573641:359759535975953598065471Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-48191
NC_012917:1840172:185541518554151855825411Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-37154
NC_013421:1819036:185411818541181854528411Pectobacterium wasabiae WPP163, complete genomehypothetical protein2e-36150
NC_016816:1545354:156135815613581561765408Pantoea ananatis LMG 5342, complete genomehypothetical protein1e-0651.6