Pre_GI: BLASTP Hits

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Query: NC_012125:4400636:4406979 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4406979, End: 4407113, Length: 135

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:4482845:449056844905684490723156Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-1992.4
NC_016832:4288980:429533542953354295469135Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein8e-1992.4
NC_011149:4390315:439665843966584396792135Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein8e-1992.4
NC_011080:4461851:446819444681944468328135Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-1890.1
NC_010102:4396500:440298244029824403137156Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1889.4
NC_016831:4286000:429250542925054292660156Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-1788.2