Pre_GI: BLASTP Hits

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Query: NC_012125:2826624:2864617 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2864617, End: 2864814, Length: 198

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2779864:279169127916912791888198Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-31134
NC_011205:2962270:297409529740952974292198Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-31134
NC_011094:2791719:283652828365282836725198Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-30130
NC_016856:2896630:294963629496362949833198Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-28125
NC_016832:2743801:275562027556202755814195Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-28122
NC_011083:2847318:290391229039122904109198Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-27121
NC_011080:2897977:290604129060412906238198Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-27121
NC_010102:2881714:289363328936332893740108Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1167.8