Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1342331 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1342331, End: 1342504, Length: 174

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:368942:380879380879381052174Salmonella enterica subsp. enterica serovar Choleraesuis strC3-like protein2e-26117
NC_016860:364981:374228374228374401174Salmonella enterica subsp. enterica serovar Typhimurium strC3-like protein5e-26116
NC_011147:2496808:251627225162722516424153Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-1479
NC_006511:2501500:252073625207362520888153Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-1479
NC_011083:374000:383040383040383168129Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,lambda phage ciii7e-1372.4
NC_013941:975353:986224986224986460237Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeantitermination protein7e-1062.8
NC_012947:3015985:302380130238013023965165Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLambda phage regulatory protein CIII2e-0961.2
NC_007946:1239278:124642712464271246591165Escherichia coli UTI89, complete genomelambda regulatory protein CIII2e-0960.8
NC_004431:1401681:140857214085721408736165Escherichia coli CFT073, complete genomeLambda Regulatory protein CIII2e-0960.8
NC_011742:1177946:118740311874031187567165Escherichia coli S88 chromosome, complete genomeRegulatory protein CIII2e-0960.8
NC_013941:3300000:330545733054573305621165Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeLambda phage regulatory protein CIII2e-0960.8
NC_013361:1558423:156722415672241567364141Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage regulatory protein CIII4e-0960.1
NC_011601:2614691:262420626242062624337132Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulatory protein7e-0855.8
NC_007946:2625461:263340026334002633531132Escherichia coli UTI89, complete genomeputative host FtsH protease inhibitor of enterobacteria phage Sf67e-0855.8