Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1342162 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1342162, End: 1342383, Length: 222

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:364981:374059374059374247189Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage ST104 protein Kil7e-31132
NC_006905:368942:380710380710380898189Salmonella enterica subsp. enterica serovar Choleraesuis strkil protein, inhibitor of host septation in Enterobacteria phage P227e-31132
NC_011147:2496808:251640525164052516593189Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-29127
NC_006511:2501500:252086925208692521057189Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-29127
NC_011083:374000:382871382871383059189Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-2098.2