Pre_GI: BLASTP Hits

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Query: NC_011989:594353:602223 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 602223, End: 602606, Length: 384

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003037:1245645:124931612493161249699384Sinorhizobium meliloti 1021 plasmid pSymA, complete sequencehypothetical protein5e-50196
NC_010998:111052:127386127386127769384Rhizobium etli CIAT 652 plasmid pA, complete sequencehypothetical protein1e-48191
NC_014006:2932959:293641029364102936781372Sphingobium japonicum UT26S chromosome 1, complete genomeputative nucleic-acid-binding protein4e-27119
NC_011901:625712:644933644933645301369Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completePilT protein-like protein4e-25113
NC_011206:1233985:125690712569071257281375Acidithiobacillus ferrooxidans ATCC 53993, complete genomePilT protein domain protein4e-2096.7
NC_011206:200000:216318216318216692375Acidithiobacillus ferrooxidans ATCC 53993, complete genomePilT protein domain protein6e-2096.3
NC_011761:1357799:137120113712011371575375Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completePIN domain-containing protein5e-2096.3
NC_018691:198909:222125222125222493369Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein5e-1889.7
NC_014643:195948:201492201492201863372Rothia dentocariosa ATCC 17931 chromosome, complete genomePilT protein domain-containing protein5e-1889.7
NC_010524:674216:677323677323677703381Leptothrix cholodnii SP-6, complete genomePilT protein domain protein1e-1788.6
NC_008595:1176658:118730011873001187671372Mycobacterium avium 104, complete genomePIN domain, putative3e-1684