Pre_GI: BLASTP Hits

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Query: NC_011989:2795811:2820659 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 2820659, End: 2820892, Length: 234

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016815:844350:861294861294861527234Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceUncharacterized protein y4hR5e-36149
NC_016814:18000:232452324523478234Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceUncharacterized protein y4hR5e-36149
NC_010511:4450312:445756444575644457794231Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein9e-24108
NC_007951:1042291:104867310486731048915243Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-1891.7
NC_009255:1890112:190820819082081908450243Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein2e-1890.9
NC_009255:1890112:189757618975761897827252Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein2e-1890.9
NC_015976:2150676:215516021551602155393234Sphingobium sp. SYK-6, complete genomehypothetical protein3e-1683.6
NC_002947:4484824:449337844933784493638261Pseudomonas putida KT2440, complete genomeISPpu13, transposase Orf31e-1478.2
NC_015556:515641:527808527808528059252Pseudomonas fulva 12-X chromosome, complete genomeISPpu13, transposase Orf33e-0960.5
NC_012791:4736084:475596147559614756209249Variovorax paradoxus S110 chromosome 1, complete genomeISPpu13, transposase Orf32e-0858.2