Pre_GI: BLASTP Hits

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Query: NC_011369:1135592:1187040 Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete

Start: 1187040, End: 1188341, Length: 1302

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010172:1522707:1544587154458715458911305Methylobacterium extorquens PA1, complete genomePeptidoglycan-binding domain 1 protein9e-98357
NC_007626:2354260:2404247240424724058541608Magnetospirillum magneticum AMB-1, complete genomehypothetical protein2e-56220
NC_014972:3688000:3692153369215336940631911Desulfobulbus propionicus DSM 2032 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein3e-54213
NC_008639:2460033:2479552247955224812431692Chlorobium phaeobacteroides DSM 266, complete genomePeptidoglycan-binding domain 1 protein6e-54211
NC_009663:2500186:2502798250279825044741677Sulfurovum sp. NBC37-1, complete genomehypothetical protein7e-50198
NC_016745:2913712:2935636293563629370871452Oceanimonas sp. GK1 chromosome, complete genomecell wall degradation protein3e-45182
NC_015277:380624:3958923958923975381647Sphingobacterium sp. 21 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein3e-45182
NC_014500:2934232:2949982294998229516701689Dickeya dadantii 3937 chromosome, complete genomeputative carboxypeptidase1e-44180
NC_005126:2063667:2083583208358320849381356Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-43177
NC_009952:1680682:1683367168336716849771611Dinoroseobacter shibae DFL 12, complete genomehypothetical protein3e-43176
NC_016778:96792:1186541186541206662013Brucella canis HSK A52141 chromosome 1, complete sequencecell wall degradation protein8e-41168
NC_003317:1030220:1052069105206910536641596Brucella melitensis 16M chromosome I, complete sequencecell wall degradation protein3e-40166
NC_003911:2042389:2056316205631620579291614Silicibacter pomeroyi DSS-3, complete genomepeptidoglycan binding protein, putative6e-40165
NC_015276:1947936:1949822194982219515101689Marinomonas mediterranea MMB-1 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein7e-40165
NC_009831:2884851:2890472289047228919231452Shewanella sediminis HAW-EB3, complete genomehypothetical protein2e-36153
NC_008686:1180388:1202142120214212037491608Paracoccus denitrificans PD1222 chromosome 1, complete sequencePeptidoglycan-binding domain 1 protein4e-34145
NC_009901:2427291:2433784243378424350881305Shewanella pealeana ATCC 700345, complete genomePeptidoglycan-binding domain 1 protein4e-33142
NC_010334:2749250:2769167276916727705011335Shewanella halifaxensis HAW-EB4, complete genomePeptidoglycan-binding domain 1 protein5e-31135
NC_016795:1441024:146288314628831463314432Brucella abortus A13334 chromosome 1, complete sequencecell wall degradation protein3e-1479.7
NC_014033:1664500:1682674168267416841641491Prevotella ruminicola 23 chromosome, complete genomeputative lipoprotein6e-1272.4
NC_016795:1441024:1463311146331114645521242Brucella abortus A13334 chromosome 1, complete sequencepeptidoglycan-binding domain-containing protein9e-0755.1