Pre_GI: BLASTP Hits

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Query: NC_011368:678291:690035 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,

Start: 690035, End: 691126, Length: 1092

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:4066926:4081209408120940827051497Methylobacterium nodulans ORS 2060, complete genomenitrogenase cofactor biosynthesis protein NifB4e-133474
NC_017249:8283701:8331134833113483327171584Bradyrhizobium japonicum USDA 6, complete genomeFeMo cofactor biosynthesis protein2e-114412
NC_004463:1898648:1921859192185919233581500Bradyrhizobium japonicum USDA 110, complete genomeFeMo cofactor biosynthesis protein2e-114412
NC_010529:296500:3291073291073306781572Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNifB FeMo cofactor biosynthesis protein7e-111400
NC_015656:3300747:3318670331867033203461677Frankia symbiont of Datisca glomerata chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB5e-106384
NC_013771:684966:6903646903646918391476Cyanobacterium UCYN-A, complete genomenitrogenase cofactor biosynthesis protein NifB3e-105382
NC_010546:553774:5611185611185625901473Cyanothece sp. ATCC 51142 chromosome circular, complete sequencenitrogenase cofactor biosynthesis protein1e-104380
NC_008278:7409711:7410328741032874117401413Frankia alni ACN14a, complete genomeFeMo cofactor biosynthesis protein nifB1e-101369
NC_014840:286767:3020603020603034631404Pantoea sp. At-9b plasmid pPAT9B03, complete sequencenitrogenase cofactor biosynthesis protein NifB3e-87322
NC_016641:2815974:2820042282004228215411500Paenibacillus terrae HPL-003 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB2e-86319
NC_014632:1514500:1517028151702815183081281Ilyobacter polytropus DSM 2926 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB7e-75281
NC_015676:1663700:168314916831491684093945Methanosalsum zhilinae DSM 4017 chromosome, complete genomeRadical SAM domain-containing protein2e-70266
NC_017295:279633:2900532900532927012649Clostridium acetobutylicum EA 2018 chromosome, complete genomeFusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molybdenum-iron protein beta chain, nifB-nitrogen8e-70264
NC_003030:279643:2900632900632927112649Clostridium acetobutylicum ATCC 824, complete genomeFusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogen8e-70264
NC_015687:279641:2900612900612927092649Clostridium acetobutylicum DSM 1731 chromosome, complete genomebifunctional nitrogenase iron molybdenum cofactor biosinthesis protein/nitrogenase molybdenum-iron protein subunit beta, nifB-nitrogenase iron-molybde8e-70264
NC_016627:1452688:1463013146301314657152703Clostridium clariflavum DSM 19732 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB1e-69263
NC_014328:522045:5333055333055359922688Clostridium ljungdahlii ATCC 49587 chromosome, complete genomenitrogenase associated protein N5e-68258
NC_011837:3052000:3060143306014330628152673Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-67255
NC_011837:1056888:1058636105863610599071272Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-67255
NC_021182:3438601:3444177344417734469662790Clostridium pasteurianum BC1, complete genomenitrogenase cofactor biosynthesis protein NifB7e-67254
NC_014328:2588994:2589918258991825911891272Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeFeMo cofactor biosynthesis protein NifB7e-65247
NC_011296:1636242:164071216407121641593882Thermodesulfovibrio yellowstonii DSM 11347, complete genomenitrogen fixation protein3e-64245
NC_016627:2637226:2647624264762426493361713Clostridium clariflavum DSM 19732 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB9e-64244
NC_011027:1763952:1777887177788717791611275Chlorobaculum parvum NCIB 8327, complete genomenitrogenase cofactor biosynthesis protein NifB3e-63242
NC_014216:2860342:2883867288386728851411275Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB8e-62237
NC_012881:478042:4780424780424793131272Desulfovibrio salexigens DSM 2638, complete genomenitrogenase cofactor biosynthesis protein NifB2e-61236
NC_015574:1676798:168113816811381681989852Methanobacterium sp. SWAN-1 chromosome, complete genomeRadical SAM domain-containing protein2e-60233
NC_009767:5230790:524314852431485244089942Roseiflexus castenholzii DSM 13941, complete genomeRadical SAM domain protein4e-60231
NC_011565:777929:7904527904527917111260Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,nitrogenase molybdenum-cofactor biosynthesis protein NifB2e-58226
NC_015216:652266:663479663479664330852Methanobacterium sp. AL-21 chromosome, complete genomeRadical SAM domain-containing protein5e-56218
NC_007681:1157402:117177711717771172652876Methanosphaera stadtmanae DSM 3091, complete genomehypothetical protein4e-56218
NC_015636:1123053:112694011269401127839900Methanothermococcus okinawensis IH1 chromosome, complete genomeRadical SAM domain-containing protein3e-53209
NC_009437:2579161:260753926075392608342804Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeradical SAM domain-containing protein5e-53208
NC_013665:1922000:195002019500201950916897Methanocella paludicola SANAE, complete genomehypothetical protein2e-52206
NC_013410:1285857:133087113308711331743873Fibrobacter succinogenes subsp. succinogenes S85 chromosome,radical SAM protein7e-49194
NC_018664:2279687:229355622935562294431876Clostridium acidurici 9a chromosome, complete genomeradical SAM domain-containing protein2e-48192
NC_012881:478042:4829284829284840581131Desulfovibrio salexigens DSM 2638, complete genomeDinitrogenase iron-molybdenum cofactor biosynthesis protein5e-1789
NC_017278:1873934:188957118895711890548978Thermus sp. CCB_US3_UF1 chromosome, complete genomeMolybdenum cofactor biosynthesis protein A8e-0755.1
NC_013512:126915:149942149942150910969Sulfurospirillum deleyianum DSM 6946, complete genomemolybdenum cofactor biosynthesis protein A2e-0653.9
NC_009617:2304390:231389223138922314866975Clostridium beijerinckii NCIMB 8052 chromosome, complete genomemolybdenum cofactor biosynthesis protein A9e-0651.6