Pre_GI: BLASTP Hits

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Query: NC_011149:4677412:4697434 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 4697434, End: 4698417, Length: 984

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009483:3173464:318203631820363182998963Geobacter uraniireducens Rf4 chromosome, complete genomeTIR protein1e-63243
NC_004603:1897532:1917688191768819187551068Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein2e-60233
NC_013730:6933754:6960740696074069635682829Spirosoma linguale DSM 74, complete genomeTIR protein2e-26119
NC_010803:1573849:158481815848181585369552Chlorobium limicola DSM 245, complete genomeTIR protein3e-0962.8