Pre_GI: BLASTP Hits

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Query: NC_011147:792489:807586 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 807586, End: 808314, Length: 729

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:792543:807631807631808368738Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein8e-140496
NC_012125:1632150:164957616495761650319744Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-132469
NC_006905:2235607:224289322428932243636744Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein4e-131467
NC_011149:2179592:218829021882902189027738Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein8e-129459
NC_004631:799810:814829814829815542714Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-124443
NC_003198:2179688:218839421883942189107714Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-124443
NC_016832:799764:814975814975815496522Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-90331