Pre_GI: BLASTP Hits

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Query: NC_011147:792489:803100 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 803100, End: 803402, Length: 303

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:2179592:219320221932022193504303Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-53207
NC_006511:792543:803154803154803456303Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-53207
NC_016832:799764:810398810398810700303Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-52204
NC_004631:799810:810444810444810746303Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-52204
NC_003198:2179688:219319021931902193492303Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-52204