Pre_GI: BLASTP Hits

Some Help

Query: NC_011147:1057259:1062882 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1062882, End: 1062998, Length: 117

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:1090274:109158010915801091696117Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-1580.9
NC_004631:1091303:109260910926091092725117Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-1580.9
NC_003198:1908238:193375619337561933872117Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-1580.9
NC_006511:1063249:106887210688721068988117Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-1580.9
NC_016863:1905454:192771519277151927834120Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein8e-1372.4
NC_016857:1903426:192568719256871925806120Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein8e-1372.4
NC_016856:1957263:197952419795241979643120Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein8e-1372.4
NC_003197:1945858:196811919681191968238120Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein8e-1372.4