Pre_GI: BLASTP Hits

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Query: NC_011094:593100:605219 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 605219, End: 605512, Length: 294

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3287671:330047133004713300764294Escherichia coli O26:H11 str. 11368 chromosome, complete genomeABC transporter ATP-binding protein1e-51201
NC_011601:2614691:262642126264212626714294Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeanti-RecBCD protein1e-51201
NC_013364:2645438:265609726560972656390294Escherichia coli O111:H- str. 11128, complete genomehypothetical protein6e-51199
NC_013364:1183000:118869411886941188987294Escherichia coli O111:H- str. 11128, complete genomeputative anti-RecBCD protein26e-51199
NC_011601:1039500:104696610469661047259294Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeanti-RecBCD protein2e-50197
NC_007946:2625461:263493726349372635233297Escherichia coli UTI89, complete genomehypothetical protein4e-50196
NC_011601:717072:725216725216725512297Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeanti-RecBCD protein4e-50196
NC_010067:2529750:259338625933862593679294Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-46184
NC_011205:609464:622062622062622355294Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853anti-RecBCD protein 22e-46184
NC_011083:374000:381497381497381793297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,anti-RecBCD protein 25e-36149
NC_016860:364981:372598372598372891294Salmonella enterica subsp. enterica serovar Typhimurium stranti-RecBCD protein 21e-32138
NC_013361:1558423:156534015653401565636297Escherichia coli O26:H11 str. 11368 chromosome, complete genomeABC transporter ATP-binding protein1e-27121
NC_012125:1330066:133995113399511340076126Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein8e-1372.4