Pre_GI: BLASTP Hits

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Query: NC_011094:3887648:3912206 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 3912206, End: 3913345, Length: 1140

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014228:3591758:3591758359175835929091152Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein; putative exported protein3e-112405
NC_009092:521519:5393975393975405631167Shewanella loihica PV-4, complete genomehypothetical protein1e-47190
NC_006347:3843228:3868577386857738697971221Bacteroides fragilis YCH46, complete genomehypothetical protein3e-45182
NC_011026:2533017:2534766253476625359261161Chloroherpeton thalassium ATCC 35110, complete genomeOuter membrane protein/protective antigen OMA87-like protein6e-22105
NC_014836:1108919:1108919110891911100251107Desulfurispirillum indicum S5 chromosome, complete genomesurface antigen (D15)1e-20100
NC_018868:2458122:2476069247606924771361068Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomesurface antigen (D15)3e-1272.8