Pre_GI: BLASTP Hits

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Query: NC_011080:383441:405862 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 405862, End: 406056, Length: 195

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:373630:396051396051396245195Salmonella enterica subsp. enterica serovar Paratyphi C straincopper chaperone7e-30129
NC_011274:376970:399390399390399584195Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91metal-binding transport protein7e-30129
NC_011083:403022:448529448529448723195Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-30129
NC_011149:361765:384199384199384393195Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein7e-30129
NC_016832:2581145:258483625848362585030195Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-29128
NC_011992:1179084:119174711917471191941195Acidovorax ebreus TPSY, complete genomeHeavy metal transport/detoxification protein2e-1891.3
NC_010067:2488141:249482324948232494972150Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1373.6
NC_009668:529175:547962547962548177216Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceheavy metal transport/detoxification protein5e-0856.6
NC_009620:1531000:154802915480291548250222Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceheavy metal transport/detoxification protein7e-0649.3