Pre_GI: BLASTP Hits

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Query: NC_011080:2982346:3022821 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 3022821, End: 3023012, Length: 192

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2967464:300929930092993009625327Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-30131
NC_003197:3005842:304631730463173046643327Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein2e-30131
NC_016810:3028421:306889330688933069219327Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 protein2e-30131
NC_016856:3026426:306655430665543066880327Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein2e-30131
NC_016857:3028421:306889330688933069219327Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein2e-30131
NC_016860:3029272:306974730697473070073327Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein2e-30131
NC_016863:2974333:301480730148073015133327Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-30131
NC_017046:3027161:306763330676333067824192Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 protein4e-30129
NC_011149:2912219:295484329548432955169327Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein4e-29126
NC_011083:3009760:302083230208323021158327Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein4e-29126
NC_013421:1173051:118214511821451182615471Pectobacterium wasabiae WPP163, complete genomehypothetical protein1e-0651.6