Pre_GI: BLASTP Hits

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Query: NC_011080:2870428:2879530 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2879530, End: 2880645, Length: 1116

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:3684840:3693835369383536949501116Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein3e-160564
NC_010102:2862178:2869904286990428710611158Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-104377
NC_011663:2813033:2820851282085128220501200Shewanella baltica OS223 chromosome, complete genomehypothetical protein8e-52204
NC_008577:2402165:2427014242701424281471134Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein1e-49197
NC_010801:238430:2481422481422493381197Burkholderia multivorans ATCC 17616 chromosome 3, completehypothetical protein4e-49195
NC_012691:2476223:2488000248800024891481149Tolumonas auensis DSM 9187, complete genomehypothetical protein3e-42172
NC_004547:1837500:1853836185383618548791044Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein8e-31134
NC_012225:1497934:1510698151069815117351038Brachyspira hyodysenteriae WA1, complete genomehypothetical protein4e-27122
NC_015160:2145915:2157954215795421591201167Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein2e-1480.5
NC_004578:4869673:487864148786414879582942Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1170.1