Pre_GI: BLASTP Hits

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Query: NC_011080:2722492:2723235 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2723235, End: 2723963, Length: 729

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:2717810:272026927202692720997729Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein RecO7e-139493
NC_016863:2721826:272294927229492723677729Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA repair protein RecO7e-139493
NC_016860:2716152:271861127186112719339729Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein RecO7e-139493
NC_016857:2719779:272090227209022721630729Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA repair protein RecO7e-139493
NC_016856:2773995:277473827747382775466729Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA repair protein RecO7e-139493
NC_016810:2719779:272090227209022721630729Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein RecO7e-139493
NC_003197:2720726:272318527231852723913729Salmonella typhimurium LT2, complete genomeDNA repair protein RecO7e-139493
NC_013941:3182576:320467332046733205401729Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA repair protein recO1e-128458
NC_012880:3241886:325235532523553253089735Dickeya dadantii Ech703, complete genomeDNA repair protein RecO6e-107386
NC_012912:1229333:123389312338931234627735Dickeya zeae Ech1591, complete genomeDNA repair protein RecO7e-107386
NC_007298:2170181:218293921829392183667729Dechloromonas aromatica RCB, complete genomeDNA repair protein RecO1e-32139
NC_021150:1322000:134330513433051343997693Azotobacter vinelandii CA6, complete genomeDNA repair protein RecO4e-31134
NC_012560:1322000:134329313432931343985693Azotobacter vinelandii DJ, complete genomeDNA repair protein RecO4e-31134
NC_009633:3055413:305776730577673058507741Alkaliphilus metalliredigens QYMF chromosome, complete genomeDNA repair protein RecO1e-0757
NC_002939:579087:606305606305607036732Geobacter sulfurreducens PCA, complete genomeDNA repair protein RecO2e-0652.4