Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:1750000:1767327 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1767327, End: 1768256, Length: 930

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1336894:133860413386041339533930Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative oxidoreductase4e-165580
NC_004631:1623511:164164916416491642578930Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative oxidoreductase4e-165580
NC_016857:1709695:172780117278011728754954Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative 2'-hydroxyisoflavone reductase7e-164576
NC_017046:1709578:172768417276841728637954Salmonella enterica subsp. enterica serovar Typhimurium str. 798oxidoreductase7e-164576
NC_003197:1753663:177097117709711771900930Salmonella typhimurium LT2, complete genomeputative 2'-hydroxyisoflavone reductase6e-164576
NC_016810:1709695:172782517278251728754930Salmonella enterica subsp. enterica serovar Typhimurium strputative oxidoreductase6e-164576
NC_016856:1763640:178094917809491781878930Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative 2'-hydroxyisoflavone reductase6e-164576
NC_016860:1752000:176866217686621769591930Salmonella enterica subsp. enterica serovar Typhimurium strputative 2'-hydroxyisoflavone reductase6e-164576
NC_016863:1711832:172914117291411730070930Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative 2'-hydroxyisoflavone reductase6e-164576
NC_011094:1726000:174414617441461745075930Salmonella enterica subsp. enterica serovar Schwarzengrund strisoflavone reductase1e-163575
NC_011149:1429523:143123314312331432162930Salmonella enterica subsp. enterica serovar Agona str. SL483,isoflavone reductase3e-163574
NC_006511:1273162:127487212748721275800929Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-87323
NC_005773:1333863:133513513351351336073939Pseudomonas syringae pv. phaseolicola 1448A, complete genomeisoflavone reductase5e-68258
NC_012660:2684981:269548926954892696427939Pseudomonas fluorescens SBW25 chromosome, complete genomeputative oxidoreductase3e-66252
NC_008542:197500:204123204123205076954Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceNmrA family protein4e-65248
NC_016612:5231065:526710852671085268061954Klebsiella oxytoca KCTC 1686 chromosome, complete genomeNmrA family protein1e-62240
NC_015138:693865:6980946980946990981005Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeNmrA family protein1e-62239