Pre_GI: BLASTP Hits

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Query: NC_010572:3925803:3946214 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 3946214, End: 3947020, Length: 807

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014210:723719:7477887477887491551368Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein9e-1787.4
NC_009953:5733211:5743649574364957476984050Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein6e-1374.7
NC_009921:4399000:4409640440964044108061167Frankia sp. EAN1pec, complete genomelipolytic protein G-D-S-L family2e-1273.2
NC_014666:8759873:8765731876573187695133783Frankia sp. EuI1c chromosome, complete genomehypothetical protein2e-1169.7
NC_013093:4522751:4535465453546545364781014Actinosynnema mirum DSM 43827, complete genomehypothetical protein6e-1168.2
NC_015957:2781740:279516727951672795991825Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein3e-0962.4
NC_020302:2116468:213374121337412134628888Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein3e-0962.4
NC_006087:28490:3976739767408101044Leifsonia xyli subsp. xyli str. CTCB07, complete genomesecreted hydrolase2e-0756.6