Pre_GI: BLASTP Hits

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Query: NC_010572:3363830:3382807 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 3382807, End: 3383397, Length: 591

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:4912982:491487349148734915463591Streptomyces fulvissimus DSM 40593, complete genomeRegulatory protein TetR2e-104377
NC_018750:4688968:469072446907244691359636Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family7e-63239
NC_016111:1:268526853368684Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator7e-45179
NC_014210:5309121:531665153166515317286636Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family3e-0858.5
NC_012522:7763426:7763426776342677647541329Rhodococcus opacus B4, complete genomeputative TetR family transcriptional regulator9e-0753.5
NC_018645:4879931:489515348951534895713561Desulfobacula toluolica Tol2, complete genomeTetR family transcriptional regulator2e-0652.4
NC_013173:1671288:167128816712881671860573Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, TetR family2e-0652
NC_008025:2211813:223224322322432232830588Deinococcus geothermalis DSM 11300, complete genometranscriptional regulator, TetR family3e-0651.6
NC_016582:7946000:795831679583167958897582Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator, TetR family protein5e-0650.8
NC_012912:2426520:243471224347122435335624Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family7e-0650.4
NC_003296:1461538:146352614635261464227702Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-0550.1