Pre_GI: BLASTP Hits

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Query: NC_010322:4623867:4655791 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4655791, End: 4659951, Length: 4161

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014323:4665610:4677072467707246812234152Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein01178
NC_013967:2103968:2136760213676021409534194Haloferax volcanii DS2 chromosome, complete genomehypothetical protein6e-71270
NC_014729:630152:6484026484026526014200Halogeometricum borinquense DSM 11551 chromosome, complete genomehypothetical protein2e-69265
NC_010067:3204682:3211587321158732157804194Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-68263
NC_013502:102430:1089231089231135154593Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequencehypothetical protein3e-65251
NC_013851:949973:9633759633759675684194Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein1e-64249
NC_010803:2474554:2482994248299424866893696Chlorobium limicola DSM 245, complete genomehypothetical protein3e-60234
NC_007643:4294818:4301226430122643057374512Rhodospirillum rubrum ATCC 11170, complete genomehypothetical protein4e-59231
NC_013440:1317982:1331658133165813363824725Haliangium ochraceum DSM 14365, complete genomehypothetical protein5e-58227
NC_009648:3224495:3233876323387632383484473Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein8e-54213
NC_017955:3670670:3708556370855637126744119Modestobacter marinus, complete genomehypothetical protein4e-46187
NC_012718:27089:4204342043464854443Burkholderia glumae BGR1 plasmid bglu_2p, complete sequencehypothetical protein2e-41172
NC_009512:5632591:5638286563828656427764491Pseudomonas putida F1, complete genomeAAA ATPase3e-29131
NC_013194:4964000:4973270497327049776584389Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein7e-27124
NC_002950:879930:8985128985129025434032Porphyromonas gingivalis W83, complete genomehypothetical protein2e-1586.3
NC_004663:3216518:3216518321651832207414224Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein2e-1069.3
NC_016609:2150863:2179879217987921847504872Niastella koreensis GR20-10 chromosome, complete genomeN-acetyltransferase GCN55e-0758.2