Pre_GI: BLASTP Hits

Some Help

Query: NC_010322:3315024:3328356 Pseudomonas putida GB-1 chromosome, complete genome

Start: 3328356, End: 3329741, Length: 1386

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017093:2357583:235758323575832358539957Actinoplanes missouriensis 431, complete genomeputative methyltransferase1e-54214
NC_010725:2589014:2589014258901425900391026Methylobacterium populi BJ001, complete genomemethyltransferase small5e-51202
NC_015594:579354:601588601588602565978Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completemethyltransferase small5e-46186
NC_014623:1883259:190387119038711904836966Stigmatella aurantiaca DW4/3-1 chromosome, complete genomemethyltransferase2e-45183
NC_011144:1073944:109336510933651094294930Phenylobacterium zucineum HLK1, complete genomeDNA methylase2e-24113
NC_008686:1592073:1614861161486116159911131Paracoccus denitrificans PD1222 chromosome 1, complete sequenceuncharacterized enzyme2e-1687
NC_005125:2456889:2456889245688924580071119Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-1170.5
NC_016114:3938721:3961843396184339634291587Streptomyces flavogriseus ATCC 33331 chromosome, complete genomemethyltransferase small3e-1170.1
NC_003155:5616000:5636158563615856377471590Streptomyces avermitilis MA-4680, complete genomerRNA or tRNA methyltransferase5e-1169.7
NC_004757:427483:473497473497474435939Nitrosomonas europaea ATCC 19718, complete genomeadenine specific methylase, HemK family5e-0963.2
NC_013169:2581500:2592250259225025938181569Kytococcus sedentarius DSM 20547, complete genomemethyltransferase family protein7e-0962.4
NC_006624:1448165:146770214677021468286585Thermococcus kodakarensis KOD1, complete genomeN5-glutamine methyltransferase, HemK family7e-0962.4
NC_002944:99000:107530107530108159630Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-0861.6
NC_008596:3404832:3404832340483234060221191Mycobacterium smegmatis str. MC2 155, complete genomecarboxylate-amine ligase6e-0859.3
NC_013517:2607043:2622783262278326238681086Sebaldella termitidis ATCC 33386, complete genomemodification methylase, HemK family7e-0858.9
NC_009380:1663545:1677847167784716793311485Salinispora tropica CNB-440 chromosome, complete genomemethyltransferase small1e-0758.5
NC_014752:617987:632643632643633554912Neisseria lactamica ST-640, complete genomeadenine-specific methylase5e-0756.2
NC_018750:770500:7707777707777719521176Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein6e-0755.8
NC_000961:1481685:151796015179601518556597Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-0654.3
NC_014122:665684:670100670100670675576Methanocaldococcus infernus ME chromosome, complete genomemethylase2e-0653.9
NC_014550:2562053:257289725728972573520624Arthrobacter arilaitensis Re117, complete genome7e-0652.4