Pre_GI: BLASTP Hits

Some Help

Query: NC_010322:1817598:1839105 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1839105, End: 1841159, Length: 2055

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:1873390:1905551190555119073951845Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein7e-28126
NC_010512:1196616:1207152120715212091942043Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencehypothetical protein6e-0963.2
NC_008563:4905186:4913953491395349158691917Escherichia coli APEC O1, complete genomehypothetical protein5e-0860.5
NC_008253:4817864:4838090483809048401382049Escherichia coli 536, complete genomehypothetical protein5e-0860.5
NC_007946:4875997:4897664489766448996401977Escherichia coli UTI89, complete genomehypothetical protein5e-0860.1
NC_013721:820852:8277468277468292691524Gardnerella vaginalis 409-05, complete genomehypothetical protein4e-0653.9