Pre_GI: BLASTP Hits

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Query: NC_010322:1520973:1531732 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1531732, End: 1532733, Length: 1002

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015954:1739789:1754879175487917558831005Halophilic archaeon DL31 chromosome, complete genomehemolytic protein HlpA-like protein2e-37156
NC_015954:1739789:175588017558801756845966Halophilic archaeon DL31 chromosome, complete genomemethyltransferase FkbM4e-37155
NC_012918:1921891:192366019236601924601942Geobacter sp. M21 chromosome, complete genomehemolytic protein HlpA-like protein7e-37154
NC_008610:944985:955686955686956630945Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),methyltransferase FkbM3e-35149
NC_014973:2945942:296375929637592964694936Geobacter sp. M18 chromosome, complete genomehemolytic protein HlpA-like protein1e-34147
NC_013894:117644:128597128597129583987Thermocrinis albus DSM 14484 chromosome, complete genomemethyltransferase FkbM3e-34145
NC_010475:420978:433404433404434288885Synechococcus sp. PCC 7002, complete genomehypothetical protein6e-30131
NC_015578:1807428:1843751184375118453311581Treponema primitia ZAS-2 chromosome, complete genomenucleotide-diphospho-sugar transferase domain-containing protein6e-29128
NC_015578:423000:442269442269443189921Treponema primitia ZAS-2 chromosome, complete genomenucleotide-diphospho-sugar transferase domain-containing protein8e-29127
NC_015578:61820:791907919080074885Treponema primitia ZAS-2 chromosome, complete genomemethyltransferase FkbM3e-28126
NC_009337:715500:7321237321237336701548Chlorobium phaeovibrioides DSM 265 chromosome, complete genomehypothetical protein3e-27122
NC_015311:24071:369703697037896927Prevotella denticola F0289 chromosome, complete genomehypothetical protein3e-27122
NC_009482:87193:978209782098803984Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein3e-24112
NC_014033:522363:530820530820531788969Prevotella ruminicola 23 chromosome, complete genomehypothetical protein5e-22105
NC_009615:3490206:3494584349458434962181635Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyl transferase family protein5e-22105
NC_020054:1002906:102068010206801021633954Fibrella aestuarina BUZ 2 drat genomeglycosyltransferase4e-1582.4
NC_016002:3704006:372546237254623726436975Pseudogulbenkiania sp. NH8B, complete genomesugar transferase1e-1067.4
NC_007512:2024880:206199320619932062934942Pelodictyon luteolum DSM 273, complete genomehypothetical protein2e-1067
NC_005823:2566588:257898925789892579930942Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130sugar transferase5e-1065.5
NC_004342:1648977:164897716489771649918942Leptospira interrogans serovar Lai str. 56601 chromosome I,hemolysin hemolytic protein hlpA5e-1065.5
NC_011026:3009500:3020086302008630217951710Chloroherpeton thalassium ATCC 35110, complete genomemethyltransferase FkbM family7e-1065.1
NC_015676:1736375:176344617634461764342897Methanosalsum zhilinae DSM 4017 chromosome, complete genomegroup 1 glycosyl transferase/2 family protein7e-1065.1
NC_020054:1002906:101975110197511020650900Fibrella aestuarina BUZ 2 drat genomehypothetical protein8e-1064.7
NC_002939:3303989:3320350332035033275557206Geobacter sulfurreducens PCA, complete genomeglycosyl transferase, group 1/2 family protein1e-0964.3
NC_011740:2135141:215213821521382153079942Escherichia fergusonii ATCC 35469, complete genomehypothetical protein3e-0963.2
NC_014002:80967:924749247493403930Methanohalophilus mahii DSM 5219 chromosome, complete genomehypothetical protein1e-0860.8
NC_008705:1022252:104461410446141045549936Mycobacterium sp. KMS, complete genomeconserved hypothetical protein5e-0858.9
NC_008146:1016446:103888010388801039815936Mycobacterium sp. MCS, complete genomehypothetical protein5e-0858.9
NC_020453:936396:961225961225962175951Agromonas oligotrophica S58 DNA, complete genomehemolysin protein2e-0756.6
NC_009615:3308538:331941233194123320371960Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyltransferase4e-0652.8