Pre_GI: BLASTP Hits

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Query: NC_010322:1:4 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4, End: 408, Length: 405

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:8394:839483948798405Pseudomonas putida KT2440, complete genomeribonuclease P6e-71265
NC_002516:6255854:626380562638056264212408Pseudomonas aeruginosa PAO1, complete genomeribonuclease P1e-52204
NC_021150:5298500:532217753221775322569393Azotobacter vinelandii CA6, complete genomeribonuclease P4e-50196
NC_012560:5338707:536428553642855364677393Azotobacter vinelandii DJ, complete genomeBacterial ribonuclease P protein4e-50196
NC_009092:4585784:460175346017534602115363Shewanella loihica PV-4, complete genomeribonuclease P protein component3e-26117
NC_015968:4790239:481217448121744812533360Enterobacter asburiae LF7a chromosome, complete genomeribonuclease P protein component5e-24109
NC_020260:3931567:393605139360513936410360Cronobacter sakazakii Sp291, complete genomeribonuclease P2e-23107
NC_004337:3590323:386790738679073868266360Shigella flexneri 2a str. 301, complete genomeribonuclease P2e-22103
NC_014315:3319865:332789633278963328255360Nitrosococcus watsoni C-113 chromosome, complete genomeribonuclease P protein component1e-1685.1
NC_007292:1:142951429514654360Candidatus Blochmannia pennsylvanicus str. BPEN, complete genomeRNase P, protein component4e-1270.1
NC_019940:1:225225617393Thioflavicoccus mobilis 8321 chromosome, complete genomeribonuclease P protein component8e-1165.9
NC_008576:4701930:471869447186944719086393Magnetococcus sp. MC-1, complete genomeribonuclease P protein component2e-0960.8
NC_004757:427483:444329444329444688360Nitrosomonas europaea ATCC 19718, complete genomeBacterial ribonuclease P protein3e-0857.4
NC_009616:1604276:161843016184301618825396Thermosipho melanesiensis BI429 chromosome, complete genomeribonuclease P protein component3e-0857
NC_012856:3615550:364708936470893647511423Ralstonia pickettii 12D chromosome 1, complete genomeribonuclease P protein component2e-0754.3
NC_003295:3688000:7187181113396Ralstonia solanacearum GMI1000, complete genomePROBABLE RIBONUCLEASE P PROTEIN COMPONENT2e-0754.3
NC_009076:75535:103449103449103859411Burkholderia pseudomallei 1106a chromosome I, complete sequenceribonuclease P protein component5e-0753.1
NC_020299:764526:809325809325809723399Candidatus Kinetoplastibacterium oncopeltii TCC290E, completeribonuclease P protein component2e-0650.8