Pre_GI: BLASTP Hits

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Query: NC_010102:283364:285897 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 285897, End: 286301, Length: 405

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004631:283289:283289283289283693405Salmonella enterica subsp. enterica serovar Typhi Ty2, completercsF protein2e-60230
NC_020211:4168189:418362141836214184025405Serratia marcescens WW4, complete genomeputative outer membrane protein, signal2e-37154
NC_015566:4205854:422179342217934222197405Serratia sp. AS12 chromosome, complete genomeouter membrane lipoprotein9e-34142
NC_009832:4136878:415303541530354153439405Serratia proteamaculans 568, complete genomeputative lipoprotein1e-33141
NC_012779:610509:618377618377618799423Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-31134
NC_008345:3287000:330599533059953306390396Shewanella frigidimarina NCIMB 400, complete genomelipoprotein, putative8e-0752.4
NC_016745:2785346:280656728065672806920354Oceanimonas sp. GK1 chromosome, complete genomeexopolysaccharide synthesis regulator RcsF5e-0649.7