Pre_GI: BLASTP Hits

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Query: NC_010067:4149298:4164142 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 4164142, End: 4164579, Length: 438

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:3364448:3364448336444833665472100Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative membrane domain involved in signal transduction; Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain3e-57220
NC_008027:2996947:3002939300293930050292091Pseudomonas entomophila L48, complete genomediguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)1e-22104
NC_010170:1417615:1420550142055014226612112Bordetella petrii, complete genomeprobable signalling protein3e-1993.6
NC_010943:1379707:1398376139837614004332058Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane GGDEF EAL signalling protein1e-1582
NC_010172:5447189:5447189544718954490871899Methylobacterium extorquens PA1, complete genomePAS sensor protein3e-1477.4
NC_011757:5742290:5746385574638557482831899Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor signal transduction histidine kinase7e-1475.9
NC_014121:1848971:1848971184897118510852115Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completediguanylate cyclase/phosphodiesterase7e-1372.8
NC_020063:2449554:2469820246982024719552136Enterobacteriaceae bacterium strain FGI 57, complete genomediguanylate cyclase (GGDEF) domain-containing protein1e-0858.2
NC_013946:879199:900612900612901367756Meiothermus ruber DSM 1279 chromosome, complete genomeputative integral membrane sensor protein4e-0856.6
NC_013446:2655955:2661666266166626632101545Comamonas testosteroni CNB-2, complete genomeputative PAS/PAC sensor protein5e-0856.6
NC_009921:5202607:521407752140775214898822Frankia sp. EAN1pec, complete genomeputative integral membrane sensor protein5e-0856.6
NC_008544:55451:7208072080739151836Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceperiplasmic sensor signal transduction histidine kinase4e-0753.5
NC_008062:81338:9426294262960971836Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceperiplasmic sensor signal transduction histidine kinase4e-0753.5