Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3023286 Escherichia coli HS, complete genome

Start: 3023286, End: 3023384, Length: 99

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:3175714:32006503200650320074899Escherichia coli E24377A, complete genometype III secretion apparatus protein, truncation5e-1063.2
NC_002695:3702344:372660637266063727223618Escherichia coli O157:H7 str. Sakai, complete genomeEivJ2e-0961.2
NC_013008:3761467:378572937857293786298570Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein2e-0961.2
NC_011353:3805819:383100338310033831572570Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein2e-0961.2
NC_002655:3769643:379391137939113794480570Escherichia coli O157:H7 EDL933, complete genometype III secretion apparatus protein2e-0961.2
NC_011751:3285646:331083433108343311709876Escherichia coli UMN026 chromosome, complete genometype III secretion protein2e-0960.8