Pre_GI: BLASTP Hits

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Query: NC_009800:2651730:2664383 Escherichia coli HS, complete genome

Start: 2664383, End: 2664613, Length: 231

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016745:2028424:203948120394812039726246Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein3e-26117
NC_007508:2783443:280213928021392802384246Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative regulatory protein, AlpA family2e-25114
NC_013722:1816561:186478018647801865040261Xanthomonas albilineans, complete genomeputative regulatory protein, alpa family2e-24110
NC_008344:2374761:237945123794512379672222Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA7e-23105
NC_008344:669498:685588685588685809222Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA7e-23105
NC_004741:2593012:261212326121232612344222Shigella flexneri 2a str. 2457T, complete genomehypothetical bacteriophage protein7e-23105
NC_011283:1307173:131055313105531310783231Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family9e-1889
NC_012912:1295653:130391113039111304300390Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA3e-1373.9
NC_012779:3016327:303186030318603032114255Edwardsiella ictaluri 93-146, complete genomephage transcriptional regulator, AlpA3e-1270.5
NC_015730:1799500:182075618207561821064309Roseobacter litoralis Och 149 chromosome, complete genomeputative prophage regulatory protein3e-1270.5
NC_015381:2859000:291193329119332912316384Burkholderia gladioli BSR3 chromosome 1, complete sequencephage transcriptional regulator, AlpA4e-1270.1
NC_011992:1318691:132734713273471327730384Acidovorax ebreus TPSY, complete genomephage transcriptional regulator, AlpA6e-1269.7
NC_015138:2069739:208640220864022086686285Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeprophage CP4-57 regulatory1e-1168.9
NC_008254:534590:552348552348552623276Mesorhizobium sp. BNC1, complete genomephage transcriptional regulator, AlpA1e-1168.6
NC_009832:4269804:428445142844514284693243Serratia proteamaculans 568, complete genomephage transcriptional regulator, AlpA3e-0753.9