Pre_GI: BLASTP Hits

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Query: NC_009800:2651730:2663465 Escherichia coli HS, complete genome

Start: 2663465, End: 2664313, Length: 849

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007973:3065632:307223730722373073226990Ralstonia metallidurans CH34 chromosome 1, complete sequenceplasmid encoded RepA protein1e-56220
NC_015259:624979:637728637728638627900Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative RepA replicase protein5e-52204
NC_015382:266000:295729573931975Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePutative RepA replicase protein7e-46184
NC_006350:3865584:388632238863223887254933Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid replication protein2e-33142
NC_011770:4924127:495919149591914960168978Pseudomonas aeruginosa LESB58, complete genomeRepA5e-30131
NC_013211:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, completeplasmid replication initiator RepA1e-20100
NC_017105:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_020,plasmid replication initiator RepA1e-20100
NC_017113:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020, completeplasmid replication initiator RepA1e-20100
NC_017118:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020, completeplasmid replication initiator RepA1e-20100
NC_017122:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020, completeplasmid replication initiator RepA1e-20100
NC_017126:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020, completeplasmid replication initiator RepA1e-20100
NC_017131:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020, completeplasmid replication initiator RepA1e-20100
NC_017149:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020, completeplasmid replication initiator RepA1e-20100
NC_015853:1:117131171312702990Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequenceRepA5e-1995.1
NC_008782:867344:885127885127886035909Acidovorax sp. JS42, complete genomeplasmid encoded RepA protein2e-1686.7
NC_008752:415599:421826421826422725900Acidovorax avenae subsp. citrulli AAC00-1, complete genomeplasmid encoded RepA protein5e-1685.1
NC_003919:2824000:2840860284086028418611002Xanthomonas axonopodis pv. citri str. 306, complete genomereplication protein4e-1685.1
NC_008702:2230396:223864922386492239074426Azoarcus sp. BH72, complete genomeprobable replicase protein(repA)9e-1684.3
NC_009664:4423829:464841046484104649252843Kineococcus radiotolerans SRS30216, complete genomeplasmid encoded RepA protein3e-1582.4
NC_007507:101887:1084411084411096671227Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative replication protein A4e-1479
NC_008702:2230396:223914422391442239623480Azoarcus sp. BH72, complete genomeprotein kinase3e-1375.9
NC_009664:4423829:444535544453554446227873Kineococcus radiotolerans SRS30216, complete genomeplasmid encoded RepA protein6e-1168.2