Pre_GI: BLASTP Hits

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Query: NC_009800:1657550:1678882 Escherichia coli HS, complete genome

Start: 1678882, End: 1679628, Length: 747

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:1533024:153732415373241538070747Shigella boydii Sb227, complete genomehypothetical protein6e-144509
NC_011283:2836000:291806229180622918772711Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-84311
NC_013850:2846069:288043028804302881140711Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function UPF02573e-84311