Pre_GI: BLASTP Hits

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Query: NC_009727:1899876:1902717 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 1902717, End: 1903457, Length: 741

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014623:7331860:7341104734110473429211818Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeprotein kinase1e-0757
NC_010162:900031:9000319000319026702640Sorangium cellulosum 'So ce 56', complete genomeprotein kinase2e-0756.2
NC_015276:2552484:2561338256133825657114374Marinomonas mediterranea MMB-1 chromosome, complete genomeserine/threonine protein kinase3e-0755.8
NC_013947:5546315:5565010556501055667551746Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeserine/threonine protein kinase1e-0653.5
NC_011661:1807101:1825286182528618272862001Dictyoglomus turgidum DSM 6724, complete genomeserine/threonine protein kinase with Chase2 sensor1e-0653.5
NC_008536:2717891:2717891271789127205032613Solibacter usitatus Ellin6076, complete genomeserine/threonine protein kinase2e-0652.8
NC_013947:5431741:5451480545148054530361557Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeserine/threonine protein kinase with PASTA sensor(s)3e-0652.4
NC_014366:3555425:3579027357902735831934167Gamma proteobacterium HdN1, complete genomeProtein kinase4e-0651.6
NC_020134:2237421:2239635223963522416412007Clostridium stercorarium subsp. stercorarium DSM 8532, completeserine/threonine-protein kinase Sps18e-0650.8