Pre_GI: BLASTP Hits

Some Help

Query: NC_009664:452195:462269 Kineococcus radiotolerans SRS30216, complete genome

Start: 462269, End: 462511, Length: 243

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013174:2013000:203895620389562039285330Jonesia denitrificans DSM 20603, complete genometranscription factor WhiB5e-1373.2
NC_008271:35909:621056210562461357Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transcriptional regulator, WhiB family4e-0960.1
NC_010612:4837346:484750748475074848031525Mycobacterium marinum M, complete genometranscriptional regulatory protein1e-0858.5
NC_008271:140846:153884153884154210327Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transcriptional regulator, WhiB family7e-0855.8
NC_008699:1816392:181793418179341818185252Nocardioides sp. JS614, complete genometranscription factor WhiB8e-0855.8
NC_016109:5455060:546957554695755469826252Kitasatospora setae KM-6054, complete genomeputative WhiB family transcriptional regulator2e-0754.7
NC_016111:613729:624324624324624704381Streptomyces cattleya NRRL 8057, complete genomeTranscription factor WhiB3e-0753.9
NC_016111:2932495:293989729398972940463567Streptomyces cattleya NRRL 8057, complete genomeprophage protein6e-0752.8
NC_015145:2693749:272982927298292730095267Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscription factor WhiB7e-0752.8
NC_009342:951761:965783965783966043261Corynebacterium glutamicum R chromosome, complete genomehypothetical protein9e-0752.4
NC_003450:788000:805532805532805792261Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein9e-0752.4
NC_010397:1751067:177275717727571773074318Mycobacterium abscessus chromosome Chromosome, complete sequencePutative transcriptional regulator, WhiB family1e-0652
NC_010168:1373337:139118713911871391444258Renibacterium salmoninarum ATCC 33209 chromosome, complete genomecell division transcription factor2e-0651.2
NC_021177:118710:121440121440121742303Streptomyces fulvissimus DSM 40593, complete genomeTranscription factor WhiB2e-0651.2
NC_008578:591357:592846592846593097252Acidothermus cellulolyticus 11B, complete genometranscription factor WhiB3e-0650.8
NC_021177:3598700:360116836011683601518351Streptomyces fulvissimus DSM 40593, complete genomeWhiB-family transcriptional regulator5e-0650.1
NC_013521:940495:959515959515959763249Sanguibacter keddieii DSM 10542, complete genometranscription factor WhiB6e-0649.7
NC_012704:1747539:176677417667741767034261Corynebacterium kroppenstedtii DSM 44385, complete genomeputative transcriptional regulator, WhiB family6e-0649.7
NC_018750:6070260:607882760788276079129303Streptomyces venezuelae ATCC 10712, complete genomeWhiB-type transcription regulator6e-0649.7
NC_015957:10403997:104106001041060010410935336Streptomyces violaceusniger Tu 4113 chromosome, complete genometranscription factor WhiB6e-0649.7
NC_016111:3026000:302606430260643026393330Streptomyces cattleya NRRL 8057, complete genomeWhiB-family transcriptional regulator; role in cell cycle control5e-0649.7
NC_018750:3661243:366739136673913667735345Streptomyces venezuelae ATCC 10712, complete genomeWhiB-type transcription regulator7e-0649.3