Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4572378 Kineococcus radiotolerans SRS30216, complete genome

Start: 4572378, End: 4573082, Length: 705

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013850:1753716:175655617565561757527972Klebsiella variicola At-22 chromosome, complete genomediguanylate cyclase with GAF sensor9e-1063.9
NC_013093:3157897:316169631616963162205510Actinosynnema mirum DSM 43827, complete genomeputative GAF sensor protein1e-0756.6
NC_014305:66500:7250972509742871779Erwinia billingiae Eb661 plasmid pEB170, complete sequenceDiguanylate cyclase/phosphodiesterase1e-0756.6
NC_007677:324000:3336823336823370383357Salinibacter ruber DSM 13855, complete genomesensory box/ggdef family protein, putative2e-0756.6
NC_014483:562594:5796755796755821522478Paenibacillus polymyxa E681 chromosome, complete genomeGAF domain containing protein7e-0754.3
NC_007513:1503955:150800415080041508741738Synechococcus sp. CC9902, complete genomeGAF1e-0653.9
NC_007722:851129:8623228623228634191098Erythrobacter litoralis HTCC2594, complete genomeputative signal transduction histidine kinase with GAF domain1e-0653.5
NC_012721:2406874:2423173242317324242911119Burkholderia glumae BGR1 chromosome 2, complete genomePutative GAF sensor protein2e-0653.1
NC_016745:546249:5462495462495490832835Oceanimonas sp. GK1 chromosome, complete genometwo-component hybrid sensor and regulator2e-0652.4
NC_005070:334952:374938374938375657720Synechococcus sp. WH 8102, complete genomehypothetical protein3e-0652.4
NC_011894:6731115:6739720673972067421372418Methylobacterium nodulans ORS 2060, complete genomeputative phytochrome sensor protein6e-0651.2
NC_016943:2054688:2071109207110920728781770Blastococcus saxobsidens DD2, complete genomeSerine phosphatase RsbU, regulator of sigma subunit9e-0650.8