Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4556624 Kineococcus radiotolerans SRS30216, complete genome

Start: 4556624, End: 4557079, Length: 456

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018524:4848154:487061648706164871275660Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, luxR family protein1e-0755.1
NC_014210:2597000:261792926179292618585657Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,two component transcriptional regulator, LuxR family8e-0752.8
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator8e-0752.8
NC_007974:1717828:171713617171361717831696Ralstonia metallidurans CH34 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family8e-0752.8
NC_016582:6811273:681717068171706817877708Streptomyces bingchenggensis BCW-1 chromosome, complete genometwo component LuxR family transcriptional regulator1e-0652
NC_015564:2870631:2901783290178329034231641Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeregulatory protein LuxR3e-0650.8
NC_018681:9262000:928193892819389282738801Nocardia brasiliensis ATCC 700358 chromosome, complete genomeDNA-binding response regulator3e-0650.8
NC_017271:64293:8293982939844771539Xanthomonas campestris pv. raphani 756C chromosome, completeLuxR family transcriptional regulator4e-0650.4
NC_015953:5865733:586713258671325867788657Streptomyces sp. SirexAA-E chromosome, complete genomeLuxR family two component transcriptional regulator3e-0650.4
NC_011894:6793497:6805443680544368069721530Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, LuxR family5e-0650.1
NC_007333:2674596:268305126830512683704654Thermobifida fusca YX, complete genomeregulatory protein, LuxR:Response regulator receiver5e-0650.1
NC_013595:1851226:186206318620631862716654Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein5e-0650.1
NC_016943:3270308:331886433188643319514651Blastococcus saxobsidens DD2, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain5e-0650.1
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family6e-0649.7
NC_018868:1271742:127431912743191274993675Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeLuxR family two component transcriptional regulator7e-0649.7
NC_016943:336550:355987355987356547561Blastococcus saxobsidens DD2, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain8e-0649.3