Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4522632 Kineococcus radiotolerans SRS30216, complete genome

Start: 4522632, End: 4524167, Length: 1536

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:3013838:3038216303821630394781263Escherichia coli E24377A, complete genomeYgbK domain protein5e-58225
NC_008800:2695977:2695977269597726972841308Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein3e-57223
NC_015224:2701914:2702534270253427037961263Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein8e-57221
NC_016863:2974333:3027937302793730291991263Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative tRNA synthase1e-56221
NC_016856:3026426:3079685307968530809471263Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative tRNA synthase1e-56221
NC_003197:3005842:3059448305944830607101263Salmonella typhimurium LT2, complete genomeputative tRNA synthase2e-56220
NC_016810:3028421:3082009308200930832711263Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-56220
NC_016857:3028421:3082009308200930832711263Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative tRNA synthase2e-56220
NC_016860:3029272:3082878308287830841401263Salmonella enterica subsp. enterica serovar Typhimurium strputative tRNA synthase2e-56220
NC_013850:2846069:2844811284481128460761266Klebsiella variicola At-22 chromosome, complete genometype III effector Hrp-dependent outers3e-56219
NC_013416:16493:1994819948211921245Aggregatibacter actinomycetemcomitans D11S-1, complete genome4-hydroxy-3-methylbut-2-enyl diphosphate reductase6e-56219
NC_011283:2836000:2837948283794828392131266Klebsiella pneumoniae 342 chromosome, complete genomeYgbK domain protein9e-56218
NC_011283:2836000:2854876285487628561411266Klebsiella pneumoniae 342 chromosome, complete genomeYgbK domain protein9e-56218
NC_016513:317197:3222633222633235101248Aggregatibacter actinomycetemcomitans ANH9381 chromosome, complete4-hydroxy-3-methylbut-2-enyl diphosphate reductase6e-55215
NC_015727:1050500:1060912106091210622131302Cupriavidus necator N-1 plasmid BB1p, complete sequencehypothetical protein5e-47189
NC_008570:1143578:1144203114420311454531251Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeYgbK domain protein6e-45182
NC_016633:1353458:1373959137395913751941236Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomehypothetical protein4e-39163
NC_014364:3500041:3524744352474435260181275Spirochaeta smaragdinae DSM 11293 chromosome, complete genometype III effector Hrp-dependent outer protein1e-30134
NC_015858:1150446:1153075115307511543341260Brucella pinnipedialis B2/94 chromosome chromosome 2, completehypothetical protein9e-1995.5
NC_013118:1109610:1112239111223911134981260Brucella microti CCM 4915 chromosome 2, complete genomehypothetical protein9e-1995.5
NC_004311:1096649:1099278109927811005371260Brucella suis 1330 chromosome II, complete sequencehypothetical protein9e-1995.5
NC_010104:1096081:1098710109871010999691260Brucella canis ATCC 23365 chromosome II, complete sequencehypothetical protein9e-1995.5
NC_010167:1085106:1087735108773510889941260Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein9e-1995.5
NC_019978:1182056:1193315119331511946161302Halobacteroides halobius DSM 5150, complete genomehypothetical protein2e-1790.9
NC_007503:1111457:1121419112141911227171299Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein4e-1789.7
NC_013406:347995:3631693631693644641296Paenibacillus sp. Y412MC10 chromosome, complete genometype III effector Hrp-dependent outers5e-1789.7
NC_003318:183914:1988721988722001281257Brucella melitensis 16M chromosome II, complete sequenceHypothetical Cytosolic Protein7e-1789
NC_009328:3322802:3342308334230833436001293Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein3e-1377
NC_020210:3341976:3364747336474733660691323Geobacillus sp. GHH01, complete genomeDUF1537 family protein2e-1274.7
NC_020291:4305521:4315519431551943168111293Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein3e-1273.6
NC_016023:1874827:1889733188973318910581326Bacillus coagulans 36D1 chromosome, complete genometype III effector Hrp-dependent outer protein6e-1272.8
NC_007624:1046500:104925710492571050081825Brucella melitensis biovar Abortus 2308 chromosome II, complete9e-1272
NC_012791:2052923:2081805208180520831691365Variovorax paradoxus S110 chromosome 1, complete genometype III effector Hrp-dependent outers1e-1172
NC_006933:1051873:1054502105450210557261225Brucella abortus biovar 1 str. 9-941 chromosome II, complete1e-1171.6
NC_014837:809911:8299778299778312481272Pantoea sp. At-9b chromosome, complete genometype III effector Hrp-dependent outer domain-containing protein3e-1170.5
NC_006300:60484:6551765517667731257Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein2e-1067.8
NC_010552:2454776:2467655246765524690641410Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetype III effector Hrp-dependent outer6e-1066.2
NC_007963:3574000:3585560358556035868881329Chromohalobacter salexigens DSM 3043, complete genometype III effector Hrp-dependent outers6e-1065.9
NC_011959:131800:1368301368301381551326Thermomicrobium roseum DSM 5159, complete genomeygbK domain protein5e-0963.2
NC_009922:2721343:2749127274912727504491323Alkaliphilus oremlandii OhILAs, complete genometype III effector Hrp-dependent outers7e-0962.8
NC_014964:1695000:1702196170219617034551260Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completetype III effector Hrp-dependent outer domain-containing protein8e-0962.4
NC_010321:1703000:1709983170998317112421260Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeHrp-dependent type III effector protein8e-0962.4
NC_006582:4256915:4259615425961542609521338Bacillus clausii KSM-K16, complete genomehypothetical protein1e-0861.6
NC_011894:2503639:2502266250226625036421377Methylobacterium nodulans ORS 2060, complete genometype III effector Hrp-dependent outers3e-0860.5
NC_014500:4049384:4067052406705240683081257Dickeya dadantii 3937 chromosome, complete genomeputative inner membrane protein1e-0758.2
NC_017986:4790482:4799644479964448010351392Pseudomonas putida ND6 chromosome, complete genometype III effector Hrp-dependent outer6e-0756.2
NC_009512:2108686:2117851211785121192421392Pseudomonas putida F1, complete genometype III effector Hrp-dependent outer6e-0756.2