Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4518906 Kineococcus radiotolerans SRS30216, complete genome

Start: 4518906, End: 4520342, Length: 1437

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019842:3755275:3755275375527537565551281Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family protein7e-40165
NC_020272:162779:1858971858971871771281Bacillus amyloliquefaciens IT-45, complete genomecitrate transporter8e-40165
NC_005773:208000:2233502233502246571308Pseudomonas syringae pv. phaseolicola 1448A, complete genomecitrate transporter2e-39164
NC_012660:3320330:3340397334039733417011305Pseudomonas fluorescens SBW25 chromosome, complete genomeputative citrate transporter3e-36153
NC_012560:5019900:5023962502396250252931332Azotobacter vinelandii DJ, complete genomeCitrate transporter3e-36153
NC_021150:5019887:5023949502394950252801332Azotobacter vinelandii CA6, complete genomeCitrate transporter3e-36153
NC_015410:3093465:3120443312044331217141272Pseudomonas mendocina NK-01 chromosome, complete genomeMg++/citrate complex transporter1e-34148
NC_020272:3187482:3189543318954331908411299Bacillus amyloliquefaciens IT-45, complete genomeMg(2+)/citrate complex secondary transporter1e-34147
NC_009848:775000:7903387903387916361299Bacillus pumilus SAFR-032, complete genomeCitMHS family citrate-magnesium (Mg2+):citrate symporter3e-33143
NC_013740:1178370:1204657120465712059611305Acidaminococcus fermentans DSM 20731, complete genomecitrate/H+ symporter, CitMHS family4e-1790.1
NC_009848:3582384:3585981358598135873091329Bacillus pumilus SAFR-032, complete genomeCitMHS family citrate-divalent cation:proton (H+) symporter3e-1584
NC_017517:1807072:1855548185554818568611314Neisseria meningitidis M01-240355 chromosome, complete genomecitrate transporter, CitMHS family8e-1582
NC_017501:1863417:1863417186341718647301314Neisseria meningitidis 8013, complete genomeputative transporter8e-1582
NC_012560:1677798:1695631169563116969381308Azotobacter vinelandii DJ, complete genomeCitrate transporter2e-1273.9
NC_021150:1677811:1695644169564416969511308Azotobacter vinelandii CA6, complete genomeCitrate transporter2e-1273.9