Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4515460 Kineococcus radiotolerans SRS30216, complete genome

Start: 4515460, End: 4516224, Length: 765

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010617:774914:825343825343826125783Kocuria rhizophila DC2201, complete genomeputative hydrolase2e-63242
NC_008543:2474002:248751024875102488442933Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceamidohydrolase 21e-22106
NC_008061:2773670:277856527785652779497933Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceamidohydrolase 21e-22106
NC_010515:1900967:190586219058621906794933Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceamidohydrolase 22e-22105
NC_011892:352652:362752362752363594843Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeamidohydrolase 21e-1790.5
NC_004129:4093610:4101896410189641035061611Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family/amidohydrolase family protein2e-1686.3
NC_009952:592000:596939596939597799861Dinoroseobacter shibae DFL 12, complete genomeamidohydrolase family protein3e-1685.9
NC_004129:4093610:409963040996304100520891Pseudomonas fluorescens Pf-5, complete genomeamidohydrolase6e-1684.7
NC_013209:1406793:142338814233881424269882Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator GntR6e-1684.3
NC_017100:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-03, complete genometranscriptional regulator GntR6e-1684.3
NC_017108:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-12, complete genometranscriptional regulator GntR6e-1684.3
NC_017111:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-32, complete genometranscriptional regulator GntR6e-1684.3
NC_017121:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-07, complete genometranscriptional regulator GntR6e-1684.3
NC_017125:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-22, complete genometranscriptional regulator GntR6e-1684.3
NC_017146:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-26, complete genometranscriptional regulator GntR6e-1684.3
NC_017150:1406793:142338814233881424269882Acetobacter pasteurianus IFO 3283-01-42C, complete genometranscriptional regulator GntR6e-1684.3
NC_015733:1976752:199438519943851995278894Pseudomonas putida S16 chromosome, complete genomehypothetical protein2e-1273.2
NC_009512:1518113:153418715341871535050864Pseudomonas putida F1, complete genomeamidohydrolase 23e-1168.9
NC_011740:3739395:374593937459393746757819Escherichia fergusonii ATCC 35469, complete genomeputative hydrolase1e-0860.5
NC_014539:743523:748293748293749216924Burkholderia sp. CCGE1003 chromosome 1, complete sequenceamidohydrolase 25e-0858.2
NC_007963:2777066:278181927818192782682864Chromohalobacter salexigens DSM 3043, complete genomeamidohydrolase 21e-0653.5